Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs34527494 chr10:935192 T/C 3.78E-7 502 21.77 24.53 14.5 KM Plot
LGG rs34569704 chr8:6184691 C/T 2.29E-5 497 21.85 24.07 7.72 KM Plot
LGG rs34597642 chr7:29659626 C/A 2.02E-5 507 21.83 25.27 8.97 KM Plot
LGG rs34637278 chr7:45855005 T/C 1.84E-5 486 24.5 19.27 25.58 KM Plot
LGG rs34638720 chr10:965527 TA/T 9.97E-5 506 23.53 22.55 14.65 KM Plot
LGG rs34751155 chr10:882007 GT/G 3.24E-7 507 21.83 24.5 14.43 KM Plot
LGG rs34836429 chr8:6184958 C/A 2.3E-5 498 22.12 23.93 7.72 KM Plot
LGG rs34847097 chr10:902252 A/T 3.22E-8 506 21.83 24.5 14.15 KM Plot
LGG rs34848525 chr8:6186254 G/A 2.29E-5 498 21.87 24.03 7.72 KM Plot
LGG rs34885925 chr10:919032 G/C 2.82E-7 507 21.65 26.03 14.5 KM Plot
LGG rs34913366 chr10:935110 AC/A 3.78E-7 502 21.77 24.53 14.5 KM Plot
LGG rs34982663 chr10:852521 C/G 1.14E-6 497 21.83 26.23 14.43 KM Plot
LGG rs35014938 chr3:194789128 T/TG 3.9E-6 501 21.35 25.83 5.17 KM Plot
LGG rs35047394 chr8:6184982 C/G 2.3E-5 498 22.12 23.93 7.72 KM Plot
LGG rs35099061 chr10:933030 TCA/T 1.48E-7 490 21.7 24.37 14.15 KM Plot